Variant report

Variant	rs10499440
Chromosome Location	chr7:14504325-14504326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14503536..14506450-chr7:14511181..14513157,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10253325	0.85[CEU][hapmap]
rs10271285	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs10486031	0.94[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs10499444	0.84[EUR][1000 genomes]
rs10950522	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10950525	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10950526	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10950529	0.82[EUR][1000 genomes]
rs11525791	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs11526188	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs11977908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11978895	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12531006	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12532388	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12533433	0.85[CEU][hapmap]
rs12533729	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12534446	0.85[CEU][hapmap]
rs12538874	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12540039	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540646	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12540892	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs1367775	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs1431523	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16878172	0.92[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs17168175	0.85[CEU][hapmap]
rs17168201	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap]
rs17168203	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs171926	1.00[CEU][hapmap]
rs17651138	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17651211	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs196750	0.85[CEU][hapmap]
rs196760	0.82[CEU][hapmap]
rs2116317	0.85[CEU][hapmap]
rs2116318	0.85[CEU][hapmap]
rs2163509	0.85[CEU][hapmap]
rs59470727	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59778011	0.96[ASN][1000 genomes]
rs61207348	0.83[EUR][1000 genomes]
rs62443470	0.87[EUR][1000 genomes]
rs62443471	0.87[EUR][1000 genomes]
rs73679788	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73679795	0.84[EUR][1000 genomes]
rs7786503	0.87[EUR][1000 genomes]
rs9639198	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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