Variant report

Variant	rs1991689
Chromosome Location	chr7:14569730-14569731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10237790	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs10251573	0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10264038	0.84[ASN][1000 genomes]
rs10267996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12533779	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs16878192	0.83[EUR][1000 genomes]
rs17168243	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1897301	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1991686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1991687	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1991688	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs61487234	0.87[EUR][1000 genomes]
rs6461105	0.82[ASN][1000 genomes]
rs7778934	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links