Variant report

Variant	rs10241141
Chromosome Location	chr7:106744514-106744515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106741436..106746909-chr7:106747521..106753328,9	K562	blood:
2	chr7:106744290..106747255-chr7:106747787..106750851,4	K562	blood:
3	chr7:106684901..106686809-chr7:106742213..106744522,2	K562	blood:
4	chr7:106740731..106742473-chr7:106742481..106744526,2	K562	blood:
5	chr7:106743520..106747466-chr7:106753735..106757334,5	K562	blood:

Variant related genes	Relation type
ENSG00000005249	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1004570	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232542	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10241155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248105	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10249866	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10261881	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10271426	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10272371	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11509187	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11760966	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11762123	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11764389	0.97[ASN][1000 genomes]
rs11767753	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11772066	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12055946	0.86[ASN][1000 genomes]
rs12154324	0.91[ASN][1000 genomes]
rs17153823	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17153861	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17340479	0.84[ASN][1000 genomes]
rs17340577	0.84[ASN][1000 genomes]
rs17341680	0.86[ASN][1000 genomes]
rs17425839	0.91[ASN][1000 genomes]
rs1860804	0.97[ASN][1000 genomes]
rs1860805	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2191917	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2237653	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2250121	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28610544	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28873708	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3752645	0.86[ASN][1000 genomes]
rs4460293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56704102	0.84[ASN][1000 genomes]
rs58979869	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6960708	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6971393	0.86[ASN][1000 genomes]
rs6978486	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7778076	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7780728	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7780784	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7780830	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7786296	0.94[ASN][1000 genomes]
rs7786692	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8180787	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv608072	chr7:106718347-106753248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106732000-106746000	Weak transcription	Right Atrium	heart
2	chr7:106740400-106746000	Weak transcription	Spleen	Spleen
3	chr7:106741600-106747400	Enhancers	Placenta	Placenta
4	chr7:106742000-106747200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:106742400-106746000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:106743000-106744800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:106743800-106744800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:106743800-106747200	Enhancers	Adipose Nuclei	Adipose
9	chr7:106744200-106744600	Genic enhancers	K562	blood
10	chr7:106744200-106745200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:106744200-106746000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:106744200-106746000	Weak transcription	Left Ventricle	heart
13	chr7:106744200-106746000	Weak transcription	Lung	lung
14	chr7:106744200-106746400	Weak transcription	Fetal Brain Female	brain
15	chr7:106744200-106755800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:106744400-106744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:106744400-106745200	Weak transcription	HUVEC	blood vessel
18	chr7:106744400-106746600	Enhancers	Fetal Heart	heart

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