Variant report

Variant	rs17153823
Chromosome Location	chr7:106730211-106730212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr7:106730108-106730437	K562	blood:	n/a	n/a
2	ARID3A	chr7:106730129-106730427	K562	blood:	n/a	n/a
3	REST	chr7:106730182-106730365	K562	blood:	n/a	n/a
4	MAFF	chr7:106730142-106730480	K562	blood:	n/a	n/a
5	ATF1	chr7:106730190-106730452	K562	blood:	n/a	n/a
6	CUX1	chr7:106730183-106730495	K562	blood:	n/a	n/a
7	MAFF	chr7:106730129-106730257	HepG2	liver:	n/a	n/a
8	CCNT2	chr7:106730181-106730390	K562	blood:	n/a	n/a
9	REST	chr7:106730110-106730397	Hela-S3	cervix:	n/a	n/a
10	RCOR1	chr7:106730126-106730427	K562	blood:	n/a	n/a
11	MAFK	chr7:106730081-106730319	HepG2	liver:	n/a	chr7:106730187-106730198 chr7:106730187-106730198
12	MAFK	chr7:106730165-106730376	K562	blood:	n/a	chr7:106730187-106730198 chr7:106730187-106730198

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106728783..106730823-chr7:106808194..106810345,2	K562	blood:

Variant related genes	Relation type
PRKAR2B	TF binding region
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1004570	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10232542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241141	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10241155	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10248105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10249866	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10271426	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11509187	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760966	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11762123	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764389	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12055946	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12154324	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17153861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17340358	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17340479	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17340577	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17341680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17424512	0.82[EUR][1000 genomes]
rs17425839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860804	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860805	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981696	1.00[CHD][hapmap]
rs2041525	0.87[EUR][1000 genomes]
rs2041526	0.87[EUR][1000 genomes]
rs2191917	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2250121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2536490	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs257377	0.88[CHD][hapmap]
rs257387	1.00[CHD][hapmap]
rs28610544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28873708	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3729876	1.00[CHD][hapmap]
rs3729877	0.88[CHD][hapmap]
rs3752645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3779500	1.00[CHD][hapmap]
rs4460293	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56704102	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58386564	0.87[EUR][1000 genomes]
rs58979869	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946931	1.00[CHD][hapmap]
rs6960708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6971393	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6978486	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7778076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780728	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780784	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780830	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786296	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7786692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180787	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9641372	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv608072	chr7:106718347-106753248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106718000-106730600	Weak transcription	Fetal Brain Female	brain
2	chr7:106719400-106730400	Weak transcription	Fetal Brain Male	brain
3	chr7:106719400-106734200	Weak transcription	Brain Anterior Caudate	brain
4	chr7:106719800-106730600	Weak transcription	Brain Germinal Matrix	brain
5	chr7:106720800-106730600	Weak transcription	Lung	lung
6	chr7:106720800-106730800	Weak transcription	Fetal Stomach	stomach
7	chr7:106721800-106730600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:106725600-106730600	Weak transcription	Spleen	Spleen
9	chr7:106727200-106730400	Weak transcription	Right Atrium	heart
10	chr7:106728800-106730600	Weak transcription	Right Ventricle	heart
11	chr7:106729400-106730600	Weak transcription	Left Ventricle	heart
12	chr7:106729600-106731600	Genic enhancers	K562	blood
13	chr7:106729800-106731200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:106730200-106731000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr7:106730200-106731000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:106730200-106731200	Enhancers	Fetal Heart	heart
17	chr7:106730200-106731400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:106730200-106731600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:106730200-106731600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:106730200-106732000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:106730200-106732200	Enhancers	Adipose Nuclei	Adipose

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