Variant report

Variant	rs2536490
Chromosome Location	chr7:106678285-106678286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106239359..106241312-chr7:106678056..106680018,2	K562	blood:
2	chr7:106677961..106680527-chr7:106682448..106684044,2	MCF-7	breast:
3	chr7:106678001..106680438-chr7:106708426..106711336,2	K562	blood:

Variant related genes	Relation type
ENSG00000005249	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1004570	0.85[EUR][1000 genomes]
rs10232542	0.80[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10241155	0.85[EUR][1000 genomes]
rs10248105	0.86[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10249866	0.85[EUR][1000 genomes]
rs10261881	1.00[JPT][hapmap]
rs10271426	0.83[EUR][1000 genomes]
rs10272371	0.80[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs11509187	0.82[EUR][1000 genomes]
rs11760966	0.83[EUR][1000 genomes]
rs11762123	0.85[EUR][1000 genomes]
rs11764389	0.83[EUR][1000 genomes]
rs11767753	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11772066	0.80[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12154324	0.80[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs17153823	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs17153861	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17340358	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17340479	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17340577	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17341680	1.00[JPT][hapmap]
rs17424512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17425839	0.80[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs1860804	0.83[EUR][1000 genomes]
rs1860805	0.83[EUR][1000 genomes]
rs2041525	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041526	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191917	0.80[EUR][1000 genomes]
rs2237653	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2250121	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs2536491	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs28610544	0.82[EUR][1000 genomes]
rs28873708	0.82[EUR][1000 genomes]
rs3752645	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs4460293	0.85[EUR][1000 genomes]
rs56704102	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58386564	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58979869	0.83[EUR][1000 genomes]
rs6960708	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs7778076	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7780728	0.85[EUR][1000 genomes]
rs7780784	0.85[EUR][1000 genomes]
rs7780830	0.85[EUR][1000 genomes]
rs7786692	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs8180787	0.82[EUR][1000 genomes]
rs849302	0.86[AFR][1000 genomes]
rs9641372	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106676200-106680000	Weak transcription	HUVEC	blood vessel
2	chr7:106676400-106684400	Weak transcription	NHLF	lung
3	chr7:106677000-106684000	Weak transcription	Fetal Brain Male	brain
4	chr7:106677000-106684400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:106677000-106684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:106677600-106679600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:106677800-106678600	Enhancers	Primary B cells from cord blood	blood
8	chr7:106678000-106679000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr7:106678200-106678600	Enhancers	Fetal Stomach	stomach
10	chr7:106678200-106679000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:106678200-106679200	Enhancers	Adipose Nuclei	Adipose
12	chr7:106678200-106680800	Enhancers	K562	blood

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