Variant report

Variant	rs17424512
Chromosome Location	chr7:106667230-106667231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106666230..106669183-chr7:106749968..106751976,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1004570	0.85[EUR][1000 genomes]
rs10232542	0.80[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10241155	0.85[EUR][1000 genomes]
rs10248105	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10249866	0.85[EUR][1000 genomes]
rs10261881	1.00[JPT][hapmap]
rs10271426	0.83[EUR][1000 genomes]
rs10272371	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11509187	0.82[EUR][1000 genomes]
rs11760966	0.83[EUR][1000 genomes]
rs11762123	0.85[EUR][1000 genomes]
rs11764389	0.83[EUR][1000 genomes]
rs11767753	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11772066	0.80[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12154324	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs17153823	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17153861	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17340358	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17340479	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17340577	0.86[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17341680	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs17425839	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1860804	0.83[EUR][1000 genomes]
rs1860805	0.83[EUR][1000 genomes]
rs2041525	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041526	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191917	0.80[EUR][1000 genomes]
rs2237653	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2250121	1.00[JPT][hapmap]
rs2536490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610544	0.82[EUR][1000 genomes]
rs28873708	0.82[EUR][1000 genomes]
rs3752645	1.00[JPT][hapmap]
rs4460293	0.85[EUR][1000 genomes]
rs56704102	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58386564	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58979869	0.83[EUR][1000 genomes]
rs6960708	1.00[JPT][hapmap]
rs7778076	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7780728	0.85[EUR][1000 genomes]
rs7780784	0.85[EUR][1000 genomes]
rs7780830	0.85[EUR][1000 genomes]
rs7786692	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs8180787	0.82[EUR][1000 genomes]
rs9641372	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106664800-106670000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:106665800-106670200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:106666000-106667600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:106666400-106667600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:106666600-106667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:106666600-106669200	Enhancers	K562	blood
7	chr7:106667000-106667400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:106667000-106668200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:106667000-106668200	Weak transcription	Adipose Nuclei	Adipose
10	chr7:106667000-106669800	Weak transcription	Fetal Brain Male	brain

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