Variant report

Variant	rs28610544
Chromosome Location	chr7:106771703-106771704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106761889..106764464-chr7:106771416..106774166,2	MCF-7	breast:
2	chr7:106769128..106772785-chr7:106778726..106781128,3	K562	blood:
3	chr15:65861121..65863713-chr7:106770992..106772890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238715	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1004570	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10232542	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10241141	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10241155	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10248105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10249866	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10253172	0.81[ASN][1000 genomes]
rs10253291	0.81[ASN][1000 genomes]
rs10261881	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271426	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10272371	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11509187	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760966	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11762123	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11764389	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767623	0.81[ASN][1000 genomes]
rs11767753	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11772066	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12055946	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154324	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12705405	0.81[ASN][1000 genomes]
rs17153823	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17153861	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17340358	0.87[EUR][1000 genomes]
rs17340479	0.87[EUR][1000 genomes]
rs17340577	0.87[EUR][1000 genomes]
rs17341680	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17424512	0.82[EUR][1000 genomes]
rs17425839	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860804	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1860805	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1981696	0.81[ASN][1000 genomes]
rs2041525	0.87[EUR][1000 genomes]
rs2041526	0.87[EUR][1000 genomes]
rs2191917	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2250121	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2536490	0.82[EUR][1000 genomes]
rs257371	0.81[ASN][1000 genomes]
rs257372	0.81[ASN][1000 genomes]
rs257373	0.81[ASN][1000 genomes]
rs257375	0.81[ASN][1000 genomes]
rs257377	0.81[ASN][1000 genomes]
rs257378	0.81[ASN][1000 genomes]
rs257379	0.81[ASN][1000 genomes]
rs257381	0.81[ASN][1000 genomes]
rs257382	0.81[ASN][1000 genomes]
rs257385	0.81[ASN][1000 genomes]
rs257386	0.81[ASN][1000 genomes]
rs257387	0.81[ASN][1000 genomes]
rs28873708	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3729876	0.81[ASN][1000 genomes]
rs3729877	0.81[ASN][1000 genomes]
rs3752645	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779500	0.81[ASN][1000 genomes]
rs4460293	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56704102	0.87[EUR][1000 genomes]
rs58386564	0.87[EUR][1000 genomes]
rs58979869	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466160	0.81[ASN][1000 genomes]
rs6946931	0.81[ASN][1000 genomes]
rs6947857	0.81[ASN][1000 genomes]
rs6960708	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971393	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977868	0.81[ASN][1000 genomes]
rs6978486	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778076	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7780728	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7780784	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7780830	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7786296	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7786692	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8180787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641372	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106759800-106774000	Weak transcription	Left Ventricle	heart
2	chr7:106760200-106782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:106763400-106779000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:106764200-106779200	Weak transcription	Fetal Stomach	stomach
7	chr7:106765000-106779000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:106767800-106782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:106768400-106772400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:106769400-106774200	Strong transcription	K562	blood
12	chr7:106770000-106779600	Weak transcription	Adipose Nuclei	Adipose
13	chr7:106771000-106771800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:106771000-106771800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:106771000-106771800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:106771200-106771800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr7:106771200-106771800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr7:106771200-106771800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr7:106771200-106772800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:106771400-106771800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr7:106771400-106771800	Enhancers	Fetal Kidney	kidney
22	chr7:106771400-106773200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:106771600-106771800	Enhancers	Brain Angular Gyrus	brain
24	chr7:106771600-106772000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr7:106771600-106773200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:106771600-106774000	Weak transcription	H9 Cell Line	embryonic stem cell

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