Variant report

Variant	rs58386564
Chromosome Location	chr7:106694274-106694275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1004570	0.90[EUR][1000 genomes]
rs10232542	0.86[EUR][1000 genomes]
rs10241155	0.90[EUR][1000 genomes]
rs10248105	0.87[EUR][1000 genomes]
rs10249866	0.90[EUR][1000 genomes]
rs10261881	0.84[EUR][1000 genomes]
rs10271426	0.88[EUR][1000 genomes]
rs10272371	0.88[EUR][1000 genomes]
rs11509187	0.87[EUR][1000 genomes]
rs11760966	0.88[EUR][1000 genomes]
rs11762123	0.90[EUR][1000 genomes]
rs11764389	0.88[EUR][1000 genomes]
rs11767753	0.88[EUR][1000 genomes]
rs11772066	0.90[EUR][1000 genomes]
rs12055946	0.83[EUR][1000 genomes]
rs12154324	0.88[EUR][1000 genomes]
rs17153823	0.87[EUR][1000 genomes]
rs17153861	0.87[EUR][1000 genomes]
rs17340358	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17340479	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17340577	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17341680	0.84[EUR][1000 genomes]
rs17424512	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17425839	0.88[EUR][1000 genomes]
rs1860804	0.88[EUR][1000 genomes]
rs1860805	0.88[EUR][1000 genomes]
rs2041525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191917	0.86[EUR][1000 genomes]
rs2237653	0.87[EUR][1000 genomes]
rs2250121	0.84[EUR][1000 genomes]
rs2536490	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28610544	0.87[EUR][1000 genomes]
rs28873708	0.87[EUR][1000 genomes]
rs3752645	0.84[EUR][1000 genomes]
rs4460293	0.90[EUR][1000 genomes]
rs56704102	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58979869	0.88[EUR][1000 genomes]
rs6960708	0.84[EUR][1000 genomes]
rs6971393	0.84[EUR][1000 genomes]
rs6978486	0.84[EUR][1000 genomes]
rs7778076	0.88[EUR][1000 genomes]
rs7780728	0.90[EUR][1000 genomes]
rs7780784	0.90[EUR][1000 genomes]
rs7780830	0.90[EUR][1000 genomes]
rs7786692	0.90[EUR][1000 genomes]
rs8180787	0.87[EUR][1000 genomes]
rs9641372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106686800-106707200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:106687800-106697400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:106688200-106697200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:106689000-106694400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:106690800-106705800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:106691600-106697200	Weak transcription	Fetal Brain Female	brain
7	chr7:106692400-106704200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:106692600-106697400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:106692800-106697200	Weak transcription	Fetal Brain Male	brain
10	chr7:106693200-106694800	Weak transcription	K562	blood
11	chr7:106694200-106694400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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