Variant report

Variant	rs17340479
Chromosome Location	chr7:106713996-106713997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1004570	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10232542	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10241141	0.84[ASN][1000 genomes]
rs10241155	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10248105	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10249866	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10261881	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10271426	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10272371	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11509187	0.87[EUR][1000 genomes]
rs11760966	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11762123	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11764389	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11767753	0.87[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11772066	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12055946	0.83[EUR][1000 genomes]
rs12154324	0.89[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17153823	0.89[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17153861	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17340358	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17340577	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17341680	0.90[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs17424512	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17425839	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1860804	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1860805	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2041525	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2041526	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2191917	0.86[EUR][1000 genomes]
rs2237653	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2250121	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2536490	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28610544	0.87[EUR][1000 genomes]
rs28873708	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3752645	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4460293	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56704102	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58386564	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58979869	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6960708	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6971393	0.85[EUR][1000 genomes]
rs6978486	0.85[EUR][1000 genomes]
rs7778076	0.89[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7780728	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7780784	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7780830	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7786296	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7786692	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8180787	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9641372	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106701600-106716000	Weak transcription	HUVEC	blood vessel
2	chr7:106706400-106718600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:106706400-106720000	Weak transcription	Spleen	Spleen
4	chr7:106706800-106719200	Weak transcription	Fetal Brain Male	brain
5	chr7:106708800-106718600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:106710200-106720000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:106711400-106716000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:106712200-106719000	Weak transcription	Brain Anterior Caudate	brain
9	chr7:106713800-106714200	Strong transcription	K562	blood

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