Variant report

Variant	rs10241170
Chromosome Location	chr7:14876917-14876918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10085417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10245728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10245925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10256424	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10257070	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10260713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10479935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1117749	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1117750	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12669279	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17168484	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1990380	0.92[EUR][1000 genomes]
rs1990381	0.96[EUR][1000 genomes]
rs217558	0.88[EUR][1000 genomes]
rs217559	0.88[EUR][1000 genomes]
rs4719427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs58737612	0.92[EUR][1000 genomes]
rs6461141	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7777002	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7789829	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7791432	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7797480	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7802899	0.88[EUR][1000 genomes]
rs961634	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9691738	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14872400-14877000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:14872400-14877600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:14872800-14877000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:14873200-14877600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:14873400-14877000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:14873400-14881200	Weak transcription	NHLF	lung
7	chr7:14873600-14877200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:14874000-14877000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:14874000-14877600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:14874400-14877000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr7:14874400-14877000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:14874400-14878200	Weak transcription	Brain Anterior Caudate	brain
13	chr7:14874800-14877000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:14875400-14877000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:14875400-14886200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:14875600-14877000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:14875600-14877000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:14875600-14877000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr7:14876000-14877000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:14876000-14877000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:14876200-14877000	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr7:14876200-14877400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:14876200-14877600	Enhancers	Fetal Heart	heart
24	chr7:14876400-14877400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr7:14876600-14877000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr7:14876600-14877000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:14876600-14877000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:14876600-14877000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr7:14876600-14877000	Enhancers	Hela-S3	cervix
30	chr7:14876600-14877600	Enhancers	Osteobl	bone
31	chr7:14876600-14879600	Weak transcription	NHDF-Ad	bronchial
32	chr7:14876800-14877000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:14876800-14877000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:14876800-14877200	Enhancers	NH-A	brain
35	chr7:14876800-14877600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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