Variant report

Variant	rs10260713
Chromosome Location	chr7:14877807-14877808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10085417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10241170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10245728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10256424	0.88[EUR][1000 genomes]
rs10257070	0.88[EUR][1000 genomes]
rs10261580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10479935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10487783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1117749	0.88[EUR][1000 genomes]
rs1117750	0.88[EUR][1000 genomes]
rs12669279	0.88[EUR][1000 genomes]
rs17168484	0.88[EUR][1000 genomes]
rs1990380	0.88[EUR][1000 genomes]
rs1990381	0.92[EUR][1000 genomes]
rs217558	0.84[EUR][1000 genomes]
rs217559	0.84[EUR][1000 genomes]
rs4719427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs58737612	0.88[EUR][1000 genomes]
rs6461141	0.84[EUR][1000 genomes]
rs7777002	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7789829	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7791432	0.84[EUR][1000 genomes]
rs7797480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802899	0.84[EUR][1000 genomes]
rs961634	0.84[EUR][1000 genomes]
rs9691738	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14873400-14881200	Weak transcription	NHLF	lung
2	chr7:14874400-14878200	Weak transcription	Brain Anterior Caudate	brain
3	chr7:14875400-14886200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:14876600-14879600	Weak transcription	NHDF-Ad	bronchial
5	chr7:14877000-14879800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:14877000-14880400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:14877000-14880400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:14877000-14880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:14877000-14881000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:14877000-14883200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:14877000-14886000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:14877200-14880200	Weak transcription	NH-A	brain
13	chr7:14877600-14878000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:14877600-14878200	Weak transcription	Osteobl	bone
15	chr7:14877800-14879800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links