Variant report

Variant	rs1117749
Chromosome Location	chr7:14888397-14888398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085417	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10241170	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10245728	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10256424	1.00[CEU][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10257070	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10260713	0.88[EUR][1000 genomes]
rs10261580	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10479935	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10487783	0.91[EUR][1000 genomes]
rs10950538	0.80[ASN][1000 genomes]
rs1117750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669279	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17168484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1990380	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1990381	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs217558	0.87[EUR][1000 genomes]
rs217559	0.87[EUR][1000 genomes]
rs58737612	0.91[EUR][1000 genomes]
rs6461141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7777002	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7789829	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7791432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7797480	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7802899	0.87[EUR][1000 genomes]
rs961634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9691738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14886400-14891400	Weak transcription	Psoas Muscle	Psoas
2	chr7:14887800-14888400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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