Variant report

Variant	rs10950538
Chromosome Location	chr7:14896924-14896925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085417	1.00[CEU][hapmap]
rs10241170	1.00[CEU][hapmap]
rs10245728	1.00[CEU][hapmap]
rs10245925	1.00[CEU][hapmap]
rs10260713	1.00[CEU][hapmap]
rs10261580	1.00[CEU][hapmap]
rs10479935	1.00[CEU][hapmap]
rs10487783	1.00[CEU][hapmap]
rs1117749	0.80[ASN][1000 genomes]
rs1117750	0.80[ASN][1000 genomes]
rs12669279	0.92[ASN][1000 genomes]
rs17168484	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1990380	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1990381	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs217558	0.92[ASN][1000 genomes]
rs217559	0.92[ASN][1000 genomes]
rs217581	0.88[ASN][1000 genomes]
rs58737612	0.83[ASN][1000 genomes]
rs7777002	1.00[CEU][hapmap]
rs7791432	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7794154	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7797480	1.00[CEU][hapmap]
rs7802899	0.93[ASN][1000 genomes]
rs961634	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9691738	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887713	chr7:14888418-14939924	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv887714	chr7:14888418-14941576	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14888400-14898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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