Variant report

Variant	rs217581
Chromosome Location	chr7:14926671-14926672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085417	1.00[CEU][hapmap]
rs10241170	1.00[CEU][hapmap]
rs10245728	1.00[CEU][hapmap]
rs10245925	1.00[CEU][hapmap]
rs10260713	1.00[CEU][hapmap]
rs10261580	1.00[CEU][hapmap]
rs10479935	1.00[CEU][hapmap]
rs10487783	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes]
rs10950538	0.88[ASN][1000 genomes]
rs12669279	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17168484	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1990380	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1990381	0.84[ASN][1000 genomes]
rs217558	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs217559	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58737612	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7777002	1.00[CEU][hapmap]
rs7791432	0.82[ASN][1000 genomes]
rs7794154	0.85[ASN][1000 genomes]
rs7797480	1.00[CEU][hapmap]
rs7802899	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs961634	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887713	chr7:14888418-14939924	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv887714	chr7:14888418-14941576	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv887715	chr7:14898282-14939924	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1027520	chr7:14905287-15035993	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv538742	chr7:14905287-15035993	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14925600-14928200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14926200-14927000	Enhancers	Brain Anterior Caudate	brain

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