Variant report

Variant	rs12669279
Chromosome Location	chr7:14893880-14893881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085417	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10241170	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10245728	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10245925	1.00[CEU][hapmap]
rs10256424	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10257070	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10260713	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10261580	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10479935	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10487783	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10950538	0.92[ASN][1000 genomes]
rs1117749	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1117750	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17168484	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1990380	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1990381	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs217558	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs217559	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs217581	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58737612	0.92[EUR][1000 genomes]
rs6461141	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7777002	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7789829	0.88[EUR][1000 genomes]
rs7791432	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794154	0.89[ASN][1000 genomes]
rs7797480	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7802899	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs961634	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691738	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887713	chr7:14888418-14939924	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv887714	chr7:14888418-14941576	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14888400-14898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14891600-14894400	Weak transcription	Fetal Heart	heart

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