Variant report

Variant	rs10241965
Chromosome Location	chr7:126905088-126905089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10226369	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10226675	1.00[JPT][hapmap]
rs10227769	1.00[JPT][hapmap]
rs10234721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234740	1.00[JPT][hapmap]
rs10243967	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261152	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273755	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280829	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563676	1.00[JPT][hapmap]
rs1419388	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17863250	1.00[JPT][hapmap]
rs17864174	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866743	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867800	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17867807	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875093	0.85[AMR][1000 genomes]
rs3779537	1.00[JPT][hapmap]
rs6947960	1.00[JPT][hapmap]
rs6961760	1.00[JPT][hapmap]
rs6961944	1.00[JPT][hapmap]
rs7805944	1.00[JPT][hapmap]
rs7806403	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126904800-126905200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr7:126905000-126905200	Enhancers	Pancreas	Pancrea
3	chr7:126905000-126906000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:126905000-126906000	Weak transcription	Rectal Mucosa Donor 31	rectum

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