Variant report

Variant	rs10242949
Chromosome Location	chr7:137997452-137997453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10236236	1.00[AMR][1000 genomes]
rs10240379	1.00[AMR][1000 genomes]
rs10258211	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264150	1.00[AMR][1000 genomes]
rs10264232	1.00[AMR][1000 genomes]
rs10266093	1.00[AMR][1000 genomes]
rs10271111	1.00[AMR][1000 genomes]
rs11971525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975661	1.00[AMR][1000 genomes]
rs12334219	1.00[AMR][1000 genomes]
rs28455808	1.00[AMR][1000 genomes]
rs28541317	1.00[AMR][1000 genomes]
rs28620635	1.00[AMR][1000 genomes]
rs28678352	1.00[AMR][1000 genomes]
rs28767250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28810494	1.00[AMR][1000 genomes]
rs28874637	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029101	chr7:137952620-138005671	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv5967	chr7:137988239-138015844	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv499698	chr7:137991842-138004097	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3501160	chr7:137994762-137997460	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1830022	chr7:137995522-137998746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137988600-137999200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:137992800-137998600	Weak transcription	Placenta	Placenta
3	chr7:137995200-138012000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:137995400-137998600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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