Variant report

Variant	rs10263190
Chromosome Location	chr7:137998870-137998871
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10236236	1.00[AMR][1000 genomes]
rs10240379	1.00[AMR][1000 genomes]
rs10242949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258211	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264150	1.00[AMR][1000 genomes]
rs10264232	1.00[AMR][1000 genomes]
rs10266093	1.00[AMR][1000 genomes]
rs10271111	1.00[AMR][1000 genomes]
rs11971525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975661	1.00[AMR][1000 genomes]
rs12334219	1.00[AMR][1000 genomes]
rs28455808	1.00[AMR][1000 genomes]
rs28541317	1.00[AMR][1000 genomes]
rs28620635	1.00[AMR][1000 genomes]
rs28678352	1.00[AMR][1000 genomes]
rs28767250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28810494	1.00[AMR][1000 genomes]
rs28874637	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029101	chr7:137952620-138005671	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv5967	chr7:137988239-138015844	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv499698	chr7:137991842-138004097	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137988600-137999200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:137995200-138012000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:137998000-138000200	Enhancers	K562	blood
4	chr7:137998000-138000400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:137998200-137999800	Enhancers	Stomach Mucosa	stomach
6	chr7:137998600-137999400	Enhancers	Fetal Intestine Small	intestine
7	chr7:137998600-137999400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr7:137998600-137999600	Enhancers	Placenta	Placenta
9	chr7:137998600-138001600	Enhancers	HepG2	liver
10	chr7:137998600-138002400	Enhancers	Fetal Intestine Large	intestine
11	chr7:137998800-137999000	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr7:137998800-137999200	Enhancers	Liver	Liver
13	chr7:137998800-137999200	Enhancers	Small Intestine	intestine
14	chr7:137998800-137999400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr7:137998800-137999400	Enhancers	Spleen	Spleen
16	chr7:137998800-137999400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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