Variant report

Variant	rs28810494
Chromosome Location	chr7:138044510-138044511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10236236	1.00[AMR][1000 genomes]
rs10240379	1.00[AMR][1000 genomes]
rs10242949	1.00[AMR][1000 genomes]
rs10258211	1.00[AMR][1000 genomes]
rs10263190	1.00[AMR][1000 genomes]
rs10264150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264232	1.00[AMR][1000 genomes]
rs10266093	1.00[AMR][1000 genomes]
rs10271111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971525	1.00[AMR][1000 genomes]
rs11975661	1.00[AMR][1000 genomes]
rs12334219	1.00[AMR][1000 genomes]
rs28455808	1.00[AMR][1000 genomes]
rs28541317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28678352	1.00[AMR][1000 genomes]
rs28767250	1.00[AMR][1000 genomes]
rs28874637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138042200-138051400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:138043600-138044800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:138043600-138045000	Enhancers	Placenta	Placenta
4	chr7:138043800-138046600	Enhancers	Hela-S3	cervix
5	chr7:138044000-138045200	Enhancers	K562	blood
6	chr7:138044400-138046600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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