Variant report

Variant	rs12334219
Chromosome Location	chr7:138081686-138081687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10236236	1.00[AMR][1000 genomes]
rs10240379	1.00[AMR][1000 genomes]
rs10242949	1.00[AMR][1000 genomes]
rs10258211	1.00[AMR][1000 genomes]
rs10263190	1.00[AMR][1000 genomes]
rs10264150	1.00[AMR][1000 genomes]
rs10264232	1.00[AMR][1000 genomes]
rs10266093	1.00[AMR][1000 genomes]
rs10271111	1.00[AMR][1000 genomes]
rs11971525	1.00[AMR][1000 genomes]
rs11975661	1.00[AMR][1000 genomes]
rs28455808	1.00[AMR][1000 genomes]
rs28541317	1.00[AMR][1000 genomes]
rs28620635	1.00[AMR][1000 genomes]
rs28678352	1.00[AMR][1000 genomes]
rs28767250	1.00[AMR][1000 genomes]
rs28810494	1.00[AMR][1000 genomes]
rs28874637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138059400-138081800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138080000-138082200	Enhancers	Fetal Intestine Large	intestine
3	chr7:138080600-138081800	Enhancers	Duodenum Mucosa	Duodenum
4	chr7:138080800-138081800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:138080800-138082000	Enhancers	Fetal Intestine Small	intestine
6	chr7:138081200-138081800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:138081200-138085600	Enhancers	HepG2	liver
8	chr7:138081200-138090600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:138081600-138086200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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