Variant report
| Variant | rs10243584 |
|---|---|
| Chromosome Location | chr7:117574241-117574242 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:116434729-116454408..7:117569455-117577236 | H1-hESC | embryonic stem cell: | embryo |
| 2 | chr7:117545017..117547997-chr7:117572368..117574500,2 | K562 | blood: | |
| 3 | 7:117100350-117112126..7:117569455-117577236 | GM12878 | blood: | |
| 4 | 7:116957165-116964911..7:117569455-117577236 | H1-hESC | embryonic stem cell: | embryo |
| 5 | 7:116604327-116608063..7:117569455-117577236 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000105989 | Chromatin interaction |
| ENSG00000198898 | Chromatin interaction |
| ENSG00000228368 | Chromatin interaction |
| ENSG00000001626 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10225268 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10237349 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10242446 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10252551 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10252658 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10255263 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10264705 | 1.00[AMR][1000 genomes] |
| rs10272355 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28515486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28671130 | 1.00[AMR][1000 genomes] |
| rs34033353 | 1.00[AMR][1000 genomes] |
| rs34191399 | 1.00[AMR][1000 genomes] |
| rs34232878 | 1.00[AMR][1000 genomes] |
| rs34611640 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34693983 | 1.00[AMR][1000 genomes] |
| rs34792764 | 1.00[AMR][1000 genomes] |
| rs35631203 | 1.00[AMR][1000 genomes] |
| rs35659137 | 1.00[AMR][1000 genomes] |
| rs35743017 | 1.00[AMR][1000 genomes] |
| rs35857603 | 1.00[AMR][1000 genomes] |
| rs36089175 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6976826 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
