Variant report

Variant	rs35743017
Chromosome Location	chr7:117511561-117511562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225268	1.00[AMR][1000 genomes]
rs10237349	1.00[AMR][1000 genomes]
rs10242446	1.00[AMR][1000 genomes]
rs10243584	1.00[AMR][1000 genomes]
rs10252551	1.00[AMR][1000 genomes]
rs10252658	1.00[AMR][1000 genomes]
rs10255263	1.00[AMR][1000 genomes]
rs10264705	1.00[AMR][1000 genomes]
rs10272355	1.00[AMR][1000 genomes]
rs28515486	1.00[AMR][1000 genomes]
rs28671130	1.00[AMR][1000 genomes]
rs34033353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34191399	1.00[AMR][1000 genomes]
rs34232878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34611640	1.00[AMR][1000 genomes]
rs34693983	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34792764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35631203	1.00[AMR][1000 genomes]
rs35659137	1.00[AMR][1000 genomes]
rs35857603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36089175	1.00[AMR][1000 genomes]
rs6976826	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117469600-117511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:117489400-117511800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:117502400-117511800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:117502800-117511800	Weak transcription	Pancreas	Pancrea
5	chr7:117504000-117512000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:117504400-117511600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:117507200-117511600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:117507600-117512000	Enhancers	Fetal Heart	heart
9	chr7:117508800-117511600	Enhancers	Fetal Lung	lung
10	chr7:117509400-117512000	Enhancers	Colon Smooth Muscle	Colon
11	chr7:117509600-117512000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:117509600-117512000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:117509800-117514400	Active TSS	Brain Anterior Caudate	brain
14	chr7:117510000-117511600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:117510200-117511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:117510200-117511800	Weak transcription	Esophagus	oesophagus
17	chr7:117510200-117513200	Active TSS	Fetal Brain Male	brain
18	chr7:117510200-117514200	Active TSS	Brain Angular Gyrus	brain
19	chr7:117510200-117514200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:117510400-117512000	Active TSS	Fetal Brain Female	brain
21	chr7:117510400-117514200	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr7:117510400-117514200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr7:117510600-117511600	Enhancers	Rectal Smooth Muscle	rectum
24	chr7:117510600-117511800	Active TSS	Stomach Smooth Muscle	stomach
25	chr7:117510800-117511600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:117510800-117511800	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr7:117510800-117513800	Active TSS	Brain Cingulate Gyrus	brain
28	chr7:117510800-117514200	Active TSS	Brain Substantia Nigra	brain
29	chr7:117511000-117511800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:117511000-117511800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr7:117511000-117511800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:117511000-117511800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr7:117511000-117512400	Active TSS	Fetal Kidney	kidney
34	chr7:117511000-117514200	Active TSS	H1 Cell Line	embryonic stem cell
35	chr7:117511200-117511600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:117511200-117511600	Flanking Active TSS	Fetal Stomach	stomach
37	chr7:117511200-117511800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr7:117511200-117511800	Active TSS	Brain Germinal Matrix	brain
39	chr7:117511400-117511600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr7:117511400-117511800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr7:117511400-117511800	Enhancers	Adipose Nuclei	Adipose
42	chr7:117511400-117512200	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr7:117511400-117513800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
44	chr7:117511400-117514000	Active TSS	NHLF	lung

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