Variant report

Variant	rs10252551
Chromosome Location	chr7:117591780-117591781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264705	1.00[AMR][1000 genomes]
rs10272355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28671130	1.00[AMR][1000 genomes]
rs34033353	1.00[AMR][1000 genomes]
rs34191399	1.00[AMR][1000 genomes]
rs34232878	1.00[AMR][1000 genomes]
rs34611640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34693983	1.00[AMR][1000 genomes]
rs34792764	1.00[AMR][1000 genomes]
rs35631203	1.00[AMR][1000 genomes]
rs35659137	1.00[AMR][1000 genomes]
rs35743017	1.00[AMR][1000 genomes]
rs35857603	1.00[AMR][1000 genomes]
rs36089175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6976826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117587000-117591800	Weak transcription	Fetal Kidney	kidney
2	chr7:117587000-117601000	Weak transcription	Fetal Lung	lung
3	chr7:117588800-117592600	Enhancers	HMEC	breast
4	chr7:117589400-117592000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:117590600-117591800	Enhancers	Fetal Intestine Small	intestine
6	chr7:117591000-117591800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:117591200-117592200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:117591400-117591800	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr7:117591600-117591800	Enhancers	Pancreas	Pancrea
10	chr7:117591600-117591800	Flanking Active TSS	NHEK	skin
11	chr7:117591600-117592000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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