Variant report
| Variant | rs34191399 |
|---|---|
| Chromosome Location | chr7:117559026-117559027 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:117544965..117546762-chr7:117557196..117559088,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10225268 | 1.00[AMR][1000 genomes] |
| rs10237349 | 1.00[AMR][1000 genomes] |
| rs10242446 | 1.00[AMR][1000 genomes] |
| rs10243584 | 1.00[AMR][1000 genomes] |
| rs10252551 | 1.00[AMR][1000 genomes] |
| rs10252658 | 1.00[AMR][1000 genomes] |
| rs10255263 | 1.00[AMR][1000 genomes] |
| rs10264705 | 1.00[AMR][1000 genomes] |
| rs10272355 | 1.00[AMR][1000 genomes] |
| rs28515486 | 1.00[AMR][1000 genomes] |
| rs28671130 | 1.00[AMR][1000 genomes] |
| rs34033353 | 1.00[AMR][1000 genomes] |
| rs34232878 | 1.00[AMR][1000 genomes] |
| rs34611640 | 1.00[AMR][1000 genomes] |
| rs34693983 | 1.00[AMR][1000 genomes] |
| rs34792764 | 1.00[AMR][1000 genomes] |
| rs35631203 | 1.00[AMR][1000 genomes] |
| rs35659137 | 1.00[AMR][1000 genomes] |
| rs35743017 | 1.00[AMR][1000 genomes] |
| rs35857603 | 1.00[AMR][1000 genomes] |
| rs36089175 | 1.00[AMR][1000 genomes] |
| rs6976826 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117558800-117559600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
