Variant report

Variant	rs10248220
Chromosome Location	chr7:146985808-146985809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10085456	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10085764	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs1021008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10225100	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10234386	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10238730	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10242430	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs10251412	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs10261539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap]
rs10262107	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs10268597	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs10276382	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10278315	0.91[JPT][hapmap]
rs10279700	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10808044	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10952678	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs12531764	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12534978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12538316	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12703895	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs12703900	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs13235260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1383011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1390725	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1404707	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1479837	0.94[CHB][hapmap]
rs1479838	0.81[CHB][hapmap]
rs1496549	0.91[JPT][hapmap]
rs1525211	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs1525215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1525216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17170378	0.92[JPT][hapmap]
rs17170379	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1917600	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs2132591	0.83[JPT][hapmap]
rs2620439	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2620440	0.94[CHB][hapmap]
rs2620441	0.94[CHB][hapmap]
rs2620450	0.82[CHB][hapmap]
rs2620452	0.81[CHB][hapmap]
rs2620454	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2692139	0.80[CHB][hapmap]
rs2692140	0.81[CHB][hapmap]
rs2692154	0.81[CHB][hapmap]
rs2692157	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2692176	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2692179	0.81[CHB][hapmap]
rs2692182	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2692183	0.89[CHB][hapmap]
rs2692186	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs2692187	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs34748606	1.00[ASN][1000 genomes]
rs4637733	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4725708	0.89[JPT][hapmap]
rs4725709	1.00[JPT][hapmap]
rs4726833	0.91[JPT][hapmap]
rs4726834	0.91[JPT][hapmap]
rs4726835	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs66602672	0.80[ASN][1000 genomes]
rs6962971	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs6974852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7790788	1.00[JPT][hapmap]
rs885610	0.91[JPT][hapmap]
rs899612	0.89[CHB][hapmap]
rs899613	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs899614	0.89[CHB][hapmap]
rs899615	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs899616	0.89[CHB][hapmap]
rs9769600	0.91[JPT][hapmap]
rs9969256	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv33975	chr7:146968440-146991336	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links