Variant report

Variant	rs6962971
Chromosome Location	chr7:146947963-146947964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146945142..146947426-chr7:146947550..146950265,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10085456	0.81[JPT][hapmap]
rs10085764	0.92[JPT][hapmap]
rs1021008	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10225100	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs10234386	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs10238730	0.91[JPT][hapmap]
rs10242430	0.92[JPT][hapmap]
rs10248220	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10250389	0.87[CHB][hapmap]
rs10251412	0.88[JPT][hapmap]
rs10262107	0.90[JPT][hapmap]
rs10268597	0.91[JPT][hapmap]
rs10276382	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10278315	0.91[JPT][hapmap]
rs10279700	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10808044	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10952678	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs12531764	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs12534978	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12538316	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs12703895	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs12703900	0.92[JPT][hapmap]
rs13235260	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1383011	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1390725	0.91[JPT][hapmap]
rs1404707	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1496549	0.91[JPT][hapmap]
rs1525211	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs1525215	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1525216	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1603449	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs1603450	0.88[CHB][hapmap]
rs17170378	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs17170379	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2132591	0.83[JPT][hapmap]
rs2620439	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2692186	0.92[JPT][hapmap]
rs2692187	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs4637733	0.91[JPT][hapmap]
rs4725708	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4725709	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs4726833	0.91[JPT][hapmap]
rs4726834	0.91[JPT][hapmap]
rs4726835	0.92[JPT][hapmap]
rs6974852	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7790788	0.82[JPT][hapmap]
rs885610	0.91[JPT][hapmap]
rs9769600	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv5996	chr7:146905699-146950685	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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