Variant report

Variant	rs10279700
Chromosome Location	chr7:146968295-146968296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10085764	0.91[JPT][hapmap]
rs1021008	0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10225100	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10234386	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10238730	0.91[JPT][hapmap]
rs10242430	0.91[JPT][hapmap]
rs10248220	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10251412	0.88[JPT][hapmap]
rs10261539	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs10262107	0.89[JPT][hapmap]
rs10268597	0.91[JPT][hapmap]
rs10276382	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10278315	0.91[JPT][hapmap]
rs10808044	0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap]
rs10952678	0.89[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12531764	0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap]
rs12534978	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs12538316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12703895	0.89[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12703900	0.91[JPT][hapmap]
rs13235260	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1383011	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1390724	0.84[ASN][1000 genomes]
rs1390725	0.85[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1404707	0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap]
rs1496549	0.91[JPT][hapmap]
rs1525211	0.89[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1525215	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs1525216	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17170378	0.92[JPT][hapmap];0.83[TSI][hapmap]
rs17170379	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1917600	0.80[ASW][hapmap];0.80[MKK][hapmap];0.88[YRI][hapmap]
rs2132591	0.82[JPT][hapmap]
rs2620439	0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap]
rs2620454	0.88[YRI][hapmap]
rs2692157	0.88[YRI][hapmap]
rs2692176	0.88[YRI][hapmap]
rs2692186	0.91[JPT][hapmap]
rs2692187	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs34748606	0.93[ASN][1000 genomes]
rs4637733	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs4725708	0.89[JPT][hapmap]
rs4725709	1.00[JPT][hapmap]
rs4726833	0.85[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs4726834	0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs4726835	0.91[JPT][hapmap]
rs66602672	0.85[ASN][1000 genomes]
rs6962971	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6974852	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7790788	1.00[JPT][hapmap]
rs885610	0.91[JPT][hapmap]
rs9769600	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146968000-146968400	Weak transcription	Fetal Lung	lung

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