Variant report

Variant	rs10268597
Chromosome Location	chr7:146975480-146975481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10085456	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10085764	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1021008	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10225100	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs10234386	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10238730	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242430	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10248220	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs10251412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10261539	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10262107	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10276382	0.91[JPT][hapmap]
rs10278315	1.00[JPT][hapmap]
rs10279700	0.91[JPT][hapmap]
rs10808044	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10952678	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12531764	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12534978	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12538316	0.91[JPT][hapmap]
rs12703895	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12703900	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13235260	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1383011	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1390725	1.00[JPT][hapmap]
rs1404707	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1479837	0.81[YRI][hapmap]
rs1496549	1.00[JPT][hapmap]
rs1525211	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1525215	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1525216	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17170378	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs17170379	0.91[JPT][hapmap]
rs2132591	0.91[JPT][hapmap]
rs2620439	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2620440	0.81[YRI][hapmap]
rs2692186	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2692187	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs34748606	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4637733	1.00[JPT][hapmap]
rs4725708	1.00[JPT][hapmap]
rs4725709	0.91[JPT][hapmap]
rs4726833	1.00[JPT][hapmap]
rs4726834	1.00[JPT][hapmap]
rs4726835	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962971	0.91[JPT][hapmap]
rs6974852	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7790788	0.91[JPT][hapmap]
rs885610	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9769600	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv33975	chr7:146968440-146991336	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146974200-146976600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:146974400-146976600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:146974400-146976800	Weak transcription	Brain Anterior Caudate	brain
4	chr7:146974800-146976800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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