Variant report

Variant	rs1025087
Chromosome Location	chr7:137427096-137427097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10215980	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10234581	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1025085	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11521066	0.84[CEU][hapmap]
rs11974351	0.81[CEU][hapmap]
rs11976084	0.85[CEU][hapmap]
rs12056089	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12707367	0.82[CHB][hapmap]
rs13234743	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13235392	0.85[CEU][hapmap]
rs1345918	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1364396	0.81[CEU][hapmap]
rs1424370	0.81[CHB][hapmap]
rs1424372	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1991084	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2113428	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs33916081	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34025316	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3778803	0.84[CEU][hapmap]
rs3800636	0.88[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3800637	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3800644	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800645	0.84[CEU][hapmap]
rs3800649	0.81[CEU][hapmap]
rs3800653	0.84[CEU][hapmap]
rs4732263	0.82[CHB][hapmap]
rs4732264	0.81[CHB][hapmap]
rs6944527	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6947142	0.85[CEU][hapmap]
rs6957797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971978	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs6976725	0.81[JPT][hapmap]
rs7795441	0.85[CEU][hapmap]
rs7802342	0.85[CEU][hapmap]
rs7806658	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7806810	0.81[CHB][hapmap]
rs9784934	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137413400-137432200	Weak transcription	Aorta	Aorta
2	chr7:137416600-137438000	Weak transcription	NH-A	brain
3	chr7:137419200-137431000	Weak transcription	Osteobl	bone
4	chr7:137419400-137438200	Weak transcription	HSMM	muscle
5	chr7:137419600-137429400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:137419600-137437800	Weak transcription	HSMMtube	muscle
7	chr7:137419800-137438000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:137425200-137429000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:137425400-137429000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:137425600-137430800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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