Variant report

Variant	rs13234743
Chromosome Location	chr7:137405605-137405606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10215980	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10234581	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs1025085	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1025087	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11521066	0.88[CEU][hapmap]
rs11974351	0.92[CEU][hapmap]
rs11976084	0.88[CEU][hapmap]
rs12056089	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12707367	0.82[CHB][hapmap]
rs13235392	0.88[CEU][hapmap]
rs1345918	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1364396	0.92[CEU][hapmap]
rs1424370	0.81[CHB][hapmap]
rs1424372	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1991084	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2113428	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs33916081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34025316	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778803	0.88[CEU][hapmap]
rs3800636	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3800637	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3800644	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800645	0.88[CEU][hapmap]
rs3800649	0.92[CEU][hapmap]
rs3800653	0.87[CEU][hapmap]
rs4732263	0.82[CHB][hapmap]
rs4732264	0.81[CHB][hapmap]
rs6944527	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6947142	0.88[CEU][hapmap]
rs6957797	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6971978	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs6976725	0.81[JPT][hapmap]
rs7795441	0.88[CEU][hapmap]
rs7802342	0.88[CEU][hapmap]
rs7806658	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7806810	0.81[CHB][hapmap]
rs9784934	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv970582	chr7:137405378-137409949	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137403200-137416200	Weak transcription	HSMMtube	muscle
2	chr7:137403400-137407800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:137403400-137412200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:137403400-137413000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:137403400-137413200	Weak transcription	Aorta	Aorta
6	chr7:137403400-137416000	Weak transcription	HSMM	muscle
7	chr7:137403600-137407800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:137403600-137408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:137403800-137409800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:137403800-137415800	Weak transcription	Osteobl	bone
11	chr7:137404000-137406400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:137404000-137409800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:137404800-137405800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:137404800-137409800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:137404800-137409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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