Variant report

Variant	rs10257276
Chromosome Location	chr7:136370812-136370813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10238281	0.80[ASN][1000 genomes]
rs10259281	0.85[ASN][1000 genomes]
rs10464719	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34910057	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4599752	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6467677	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6952288	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6965638	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7787141	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136370200-136371000	Enhancers	Brain Germinal Matrix	brain
2	chr7:136370400-136371200	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr7:136370400-136372600	Enhancers	Fetal Heart	heart
4	chr7:136370800-136371800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:136370800-136372000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:136370800-136372000	Weak transcription	HSMMtube	muscle
7	chr7:136370800-136377000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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