Variant report

Variant	rs6467677
Chromosome Location	chr7:136362465-136362466
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10257276	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10259281	0.83[ASN][1000 genomes]
rs10464719	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34910057	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4434546	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs4599752	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4732231	0.81[CEU][hapmap]
rs6952288	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6965638	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7787141	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136361800-136362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:136361800-136362800	Enhancers	NHLF	lung
3	chr7:136361800-136363200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:136361800-136363400	Enhancers	HMEC	breast
5	chr7:136362000-136362600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:136362000-136362600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:136362000-136362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:136362000-136363000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr7:136362000-136363000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:136362000-136363000	Enhancers	Dnd41	blood
11	chr7:136362000-136363000	Enhancers	Hela-S3	cervix
12	chr7:136362000-136363200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:136362000-136363200	Enhancers	NH-A	brain
14	chr7:136362200-136362600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:136362200-136362800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:136362200-136362800	Enhancers	Adipose Nuclei	Adipose
17	chr7:136362200-136362800	Enhancers	GM12878-XiMat	blood
18	chr7:136362200-136363000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:136362200-136363000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:136362200-136363000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:136362200-136363200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:136362400-136363000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:136362400-136363200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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