Variant report

Variant	rs10464719
Chromosome Location	chr7:136342753-136342754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10257276	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10259281	0.83[ASN][1000 genomes]
rs10277548	0.82[ASN][1000 genomes]
rs10954541	0.82[ASN][1000 genomes]
rs11762747	0.87[ASN][1000 genomes]
rs11975460	0.82[ASN][1000 genomes]
rs1806271	0.81[ASN][1000 genomes]
rs34910057	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4434546	0.81[ASN][1000 genomes]
rs4599752	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62485168	0.82[ASN][1000 genomes]
rs6467677	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6467680	0.82[ASN][1000 genomes]
rs6952288	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6962503	0.84[ASN][1000 genomes]
rs6965638	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7787141	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136341400-136342800	Enhancers	Colon Smooth Muscle	Colon
2	chr7:136341600-136343000	Enhancers	Fetal Stomach	stomach
3	chr7:136341600-136343000	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:136342600-136344000	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links