Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10259281	0.83[ASN][1000 genomes]
rs10277548	0.92[ASN][1000 genomes]
rs10464719	0.87[ASN][1000 genomes]
rs10954541	0.94[ASN][1000 genomes]
rs10954542	0.84[ASN][1000 genomes]
rs11975460	0.95[ASN][1000 genomes]
rs1806271	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34910057	0.80[ASN][1000 genomes]
rs4397326	0.92[ASN][1000 genomes]
rs4434546	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4574788	0.81[ASN][1000 genomes]
rs4599752	0.80[ASN][1000 genomes]
rs62485168	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6467680	0.92[ASN][1000 genomes]
rs6952288	0.81[ASN][1000 genomes]
rs6962503	0.88[ASN][1000 genomes]
rs6965638	0.83[ASN][1000 genomes]
rs7787141	0.81[ASN][1000 genomes]
rs7796493	0.84[ASN][1000 genomes]
rs7796504	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136348800-136351200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:136349000-136351200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:136349200-136351200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:136349400-136350200	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search: