Variant report

Variant	rs4397326
Chromosome Location	chr7:136401356-136401357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10238281	0.87[ASN][1000 genomes]
rs10259281	0.88[ASN][1000 genomes]
rs10277548	0.96[ASN][1000 genomes]
rs10954541	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10954542	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11762747	0.92[ASN][1000 genomes]
rs11975460	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1806271	0.81[ASN][1000 genomes]
rs34910057	0.83[ASN][1000 genomes]
rs4434546	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4574788	0.85[ASN][1000 genomes]
rs4599752	0.83[ASN][1000 genomes]
rs62485168	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467680	0.96[ASN][1000 genomes]
rs6952288	0.84[ASN][1000 genomes]
rs6962503	0.93[ASN][1000 genomes]
rs7787141	0.90[ASN][1000 genomes]
rs7796493	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7796504	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136401000-136401600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:136401200-136401400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr7:136401200-136401600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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