Variant report

Variant	rs10259281
Chromosome Location	chr7:136389040-136389041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10238281	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10257276	0.85[ASN][1000 genomes]
rs10277548	0.90[ASN][1000 genomes]
rs10464719	0.83[ASN][1000 genomes]
rs10954541	0.88[ASN][1000 genomes]
rs11762747	0.83[ASN][1000 genomes]
rs11975460	0.89[ASN][1000 genomes]
rs34910057	0.94[ASN][1000 genomes]
rs4397326	0.88[ASN][1000 genomes]
rs4434546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4599752	0.94[ASN][1000 genomes]
rs62485168	0.89[ASN][1000 genomes]
rs6467677	0.83[ASN][1000 genomes]
rs6467680	0.90[ASN][1000 genomes]
rs6952288	0.96[ASN][1000 genomes]
rs6962503	0.86[ASN][1000 genomes]
rs6965638	0.89[ASN][1000 genomes]
rs7787141	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136384600-136394800	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:136389000-136389200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:136389000-136389800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links