Variant report

Variant	rs10259958
Chromosome Location	chr7:10812405-10812406
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:10810774..10813337-chr7:10818545..10820723,2	K562	blood:
2	chr7:10809717..10814120-chr7:10815612..10822714,11	K562	blood:
3	chr7:10809012..10810687-chr7:10812271..10814019,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10232354	0.96[ASN][1000 genomes]
rs10264971	0.97[ASN][1000 genomes]
rs10274493	0.87[ASN][1000 genomes]
rs10486094	0.82[ASN][1000 genomes]
rs10486096	0.83[ASN][1000 genomes]
rs10950313	0.81[ASN][1000 genomes]
rs10950314	0.81[ASN][1000 genomes]
rs11971102	0.82[ASN][1000 genomes]
rs11974904	0.94[ASN][1000 genomes]
rs11976168	0.83[ASN][1000 genomes]
rs11978409	0.80[ASN][1000 genomes]
rs12538903	0.97[ASN][1000 genomes]
rs13246956	0.97[ASN][1000 genomes]
rs17163474	0.80[ASN][1000 genomes]
rs17163529	0.82[ASN][1000 genomes]
rs17163540	0.83[ASN][1000 genomes]
rs17595998	0.84[ASN][1000 genomes]
rs2189534	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2189538	0.81[ASN][1000 genomes]
rs2189539	0.81[ASN][1000 genomes]
rs2189542	0.96[ASN][1000 genomes]
rs2189543	0.81[ASN][1000 genomes]
rs2882976	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236260	0.96[ASN][1000 genomes]
rs4289707	0.81[ASN][1000 genomes]
rs4467838	0.94[ASN][1000 genomes]
rs4719250	0.96[ASN][1000 genomes]
rs4720897	0.97[ASN][1000 genomes]
rs4720898	0.97[ASN][1000 genomes]
rs4720900	0.89[ASN][1000 genomes]
rs4720901	0.96[ASN][1000 genomes]
rs4720904	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4720905	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6947964	0.96[ASN][1000 genomes]
rs6948792	0.83[ASN][1000 genomes]
rs6973621	0.95[ASN][1000 genomes]
rs6974968	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6978203	0.97[ASN][1000 genomes]
rs6978956	0.80[ASN][1000 genomes]
rs6979090	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6979248	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6979759	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73678140	0.83[ASN][1000 genomes]
rs73678141	0.83[ASN][1000 genomes]
rs73678142	0.83[ASN][1000 genomes]
rs73678143	0.83[ASN][1000 genomes]
rs73678145	0.81[ASN][1000 genomes]
rs73680912	0.82[ASN][1000 genomes]
rs757390	0.96[ASN][1000 genomes]
rs757391	0.96[ASN][1000 genomes]
rs7784127	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7787685	0.83[ASN][1000 genomes]
rs7788250	0.82[ASN][1000 genomes]
rs7795776	0.81[ASN][1000 genomes]
rs9692246	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9692253	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887596	chr7:10493399-10852392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1018905	chr7:10679889-10980691	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	esv2752139	chr7:10798492-10954219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10809000-10814000	Weak transcription	K562	blood
2	chr7:10812400-10813000	Enhancers	HUES48 Cell Line	embryonic stem cell

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