Variant report

Variant	rs4720904
Chromosome Location	chr7:10805727-10805728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:10803159..10807219-chr7:10807656..10811292,5	K562	blood:
2	chr7:10771076..10773023-chr7:10803352..10806015,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10232354	0.97[ASN][1000 genomes]
rs10259958	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10264971	0.98[ASN][1000 genomes]
rs10274493	0.88[ASN][1000 genomes]
rs10486094	0.83[ASN][1000 genomes]
rs10486096	0.83[ASN][1000 genomes]
rs10950313	0.82[ASN][1000 genomes]
rs10950314	0.82[ASN][1000 genomes]
rs11971102	0.83[ASN][1000 genomes]
rs11974904	0.95[ASN][1000 genomes]
rs11976168	0.83[ASN][1000 genomes]
rs11978409	0.81[ASN][1000 genomes]
rs12538903	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13246956	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17163474	0.81[ASN][1000 genomes]
rs17163529	0.83[ASN][1000 genomes]
rs17163540	0.83[ASN][1000 genomes]
rs17595998	0.85[ASN][1000 genomes]
rs2189534	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2189538	0.82[ASN][1000 genomes]
rs2189539	0.82[ASN][1000 genomes]
rs2189542	0.97[ASN][1000 genomes]
rs2189543	0.82[ASN][1000 genomes]
rs2882976	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236260	0.97[ASN][1000 genomes]
rs4289707	0.82[ASN][1000 genomes]
rs4467838	0.94[ASN][1000 genomes]
rs4719250	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4720897	0.98[ASN][1000 genomes]
rs4720898	0.98[ASN][1000 genomes]
rs4720900	0.90[ASN][1000 genomes]
rs4720901	0.97[ASN][1000 genomes]
rs4720905	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947964	0.96[ASN][1000 genomes]
rs6948792	0.83[ASN][1000 genomes]
rs6973621	0.96[ASN][1000 genomes]
rs6974968	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6978203	0.98[ASN][1000 genomes]
rs6979090	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6979248	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6979759	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73678140	0.83[ASN][1000 genomes]
rs73678141	0.83[ASN][1000 genomes]
rs73678142	0.83[ASN][1000 genomes]
rs73678143	0.83[ASN][1000 genomes]
rs73678145	0.80[ASN][1000 genomes]
rs73680912	0.83[ASN][1000 genomes]
rs757390	0.97[ASN][1000 genomes]
rs757391	0.97[ASN][1000 genomes]
rs7784127	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7787685	0.83[ASN][1000 genomes]
rs7788250	0.83[ASN][1000 genomes]
rs7795776	0.80[ASN][1000 genomes]
rs9692246	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9692253	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887596	chr7:10493399-10852392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025328	chr7:10518861-10810504	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1018905	chr7:10679889-10980691	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	esv2764009	chr7:10792150-10808021	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2752139	chr7:10798492-10954219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10803400-10809000	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links