Variant report

Variant	rs13246956
Chromosome Location	chr12:118063636-118063637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10232354	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259958	0.97[ASN][1000 genomes]
rs10264971	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274493	0.86[ASN][1000 genomes]
rs10486094	0.81[ASN][1000 genomes]
rs10486096	0.81[ASN][1000 genomes]
rs10950313	0.82[ASN][1000 genomes]
rs10950314	0.82[ASN][1000 genomes]
rs11971102	0.81[ASN][1000 genomes]
rs11974904	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11976168	0.81[ASN][1000 genomes]
rs11978409	0.80[ASN][1000 genomes]
rs12538903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163474	0.81[ASN][1000 genomes]
rs17163529	0.81[ASN][1000 genomes]
rs17163540	0.82[ASN][1000 genomes]
rs17595998	0.83[ASN][1000 genomes]
rs2189534	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2189538	0.81[ASN][1000 genomes]
rs2189539	0.82[ASN][1000 genomes]
rs2189542	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2189543	0.81[ASN][1000 genomes]
rs2882976	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4236260	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289707	0.82[ASN][1000 genomes]
rs4467838	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4719250	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4720897	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720898	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720900	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4720901	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4720904	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4720905	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6947964	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6948792	0.82[ASN][1000 genomes]
rs6973621	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6974968	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978203	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979090	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979248	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6979759	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73678140	0.82[ASN][1000 genomes]
rs73678141	0.82[ASN][1000 genomes]
rs73678142	0.81[ASN][1000 genomes]
rs73678143	0.81[ASN][1000 genomes]
rs73680912	0.81[ASN][1000 genomes]
rs757390	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs757391	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7784127	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7787685	0.81[ASN][1000 genomes]
rs7788250	0.82[ASN][1000 genomes]
rs9692246	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9692253	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118061000-118075000	Weak transcription	HUVEC	blood vessel

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