Variant report

Variant	rs11978409
Chromosome Location	chr7:10786301-10786302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10230225	0.87[ASN][1000 genomes]
rs10230296	0.89[ASN][1000 genomes]
rs10232354	0.81[ASN][1000 genomes]
rs10233178	0.89[ASN][1000 genomes]
rs10235207	0.90[ASN][1000 genomes]
rs10238503	0.88[ASN][1000 genomes]
rs10241830	0.88[ASN][1000 genomes]
rs10250526	0.89[ASN][1000 genomes]
rs10258847	0.87[ASN][1000 genomes]
rs10259141	0.87[ASN][1000 genomes]
rs10259958	0.80[ASN][1000 genomes]
rs10264572	0.91[ASN][1000 genomes]
rs10264971	0.80[ASN][1000 genomes]
rs10268146	0.88[ASN][1000 genomes]
rs10268469	0.90[ASN][1000 genomes]
rs10272459	0.90[ASN][1000 genomes]
rs10276033	0.88[ASN][1000 genomes]
rs10276038	0.91[ASN][1000 genomes]
rs10278489	0.89[ASN][1000 genomes]
rs10486094	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486096	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10486100	0.90[ASN][1000 genomes]
rs10950313	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10950314	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11971102	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11976168	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12113341	0.82[ASN][1000 genomes]
rs12538903	0.80[ASN][1000 genomes]
rs12670938	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12671358	0.91[ASN][1000 genomes]
rs12671384	0.91[ASN][1000 genomes]
rs13246956	0.80[ASN][1000 genomes]
rs17163474	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17163486	0.82[ASN][1000 genomes]
rs17163529	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17163540	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2189534	0.88[ASN][1000 genomes]
rs2189538	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2189539	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2189542	0.81[ASN][1000 genomes]
rs2189543	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28681162	0.87[ASN][1000 genomes]
rs2882976	0.81[ASN][1000 genomes]
rs4236260	0.81[ASN][1000 genomes]
rs4289707	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719250	0.81[ASN][1000 genomes]
rs4720897	0.80[ASN][1000 genomes]
rs4720898	0.80[ASN][1000 genomes]
rs4720901	0.81[ASN][1000 genomes]
rs4720904	0.81[ASN][1000 genomes]
rs4720905	0.81[ASN][1000 genomes]
rs56137539	0.90[ASN][1000 genomes]
rs57599855	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59864617	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62454232	0.90[ASN][1000 genomes]
rs62454237	0.87[ASN][1000 genomes]
rs6460748	0.90[ASN][1000 genomes]
rs6944034	0.91[ASN][1000 genomes]
rs6944274	0.88[ASN][1000 genomes]
rs6944330	0.91[ASN][1000 genomes]
rs6947809	0.82[ASN][1000 genomes]
rs6947964	0.80[ASN][1000 genomes]
rs6948792	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950230	0.88[ASN][1000 genomes]
rs6961358	0.91[ASN][1000 genomes]
rs6961857	0.91[ASN][1000 genomes]
rs6963007	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6971463	0.87[ASN][1000 genomes]
rs6974968	0.80[ASN][1000 genomes]
rs6978101	0.88[ASN][1000 genomes]
rs6978203	0.80[ASN][1000 genomes]
rs6978956	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6979248	0.80[ASN][1000 genomes]
rs6979759	0.80[ASN][1000 genomes]
rs73678140	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73678141	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73678142	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73678143	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73678145	0.94[ASN][1000 genomes]
rs73678147	0.91[ASN][1000 genomes]
rs73678149	0.91[ASN][1000 genomes]
rs73680912	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs739889	0.82[ASN][1000 genomes]
rs739890	0.82[ASN][1000 genomes]
rs739891	0.82[ASN][1000 genomes]
rs757390	0.81[ASN][1000 genomes]
rs757391	0.81[ASN][1000 genomes]
rs7784127	0.80[ASN][1000 genomes]
rs7787685	0.96[ASN][1000 genomes]
rs7788250	0.98[ASN][1000 genomes]
rs7795776	0.94[ASN][1000 genomes]
rs7809961	0.88[ASN][1000 genomes]
rs9692246	0.81[ASN][1000 genomes]
rs9692253	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887596	chr7:10493399-10852392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025328	chr7:10518861-10810504	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1018905	chr7:10679889-10980691	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10779800-10798200	Weak transcription	K562	blood

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