Variant report

Variant	rs10261635
Chromosome Location	chr7:98976486-98976487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98975447..98980936-chr7:99003746..99008536,8	MCF-7	breast:
2	chr7:98927030..98929384-chr7:98976181..98977844,2	MCF-7	breast:
3	chr7:98975439..98979350-chr7:99003635..99008025,5	K562	blood:
4	chr7:98976344..98978332-chr7:98985918..98989033,3	MCF-7	breast:
5	chr7:98965082..98967314-chr7:98975254..98977961,2	K562	blood:
6	chr7:98976192..98977767-chr7:99011584..99014530,2	MCF-7	breast:
7	chr7:98975550..98978554-chr7:98995134..98998882,4	K562	blood:
8	chr17:66637981..66640873-chr7:98975754..98977781,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000239133	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000130429	Chromatin interaction
ENSG00000106245	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10085772	0.82[EUR][1000 genomes]
rs10236240	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10268984	0.85[AMR][1000 genomes]
rs10275381	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10277447	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10953288	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10953289	0.84[EUR][1000 genomes]
rs11971640	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11974593	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11980995	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12531852	0.84[EUR][1000 genomes]
rs13226604	0.91[EUR][1000 genomes]
rs2003498	0.86[EUR][1000 genomes]
rs4765	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6960810	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs704798	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7778859	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10261635	ARPC1B	cis	Thyroid	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98970800-98977000	Weak transcription	Fetal Lung	lung
2	chr7:98971000-98990400	Weak transcription	Fetal Kidney	kidney
3	chr7:98973200-98978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:98973400-98976600	Weak transcription	NH-A	brain
5	chr7:98973400-98976600	Weak transcription	NHLF	lung
6	chr7:98973400-98976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:98973400-98976800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:98973400-98976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:98973400-98976800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:98973400-98976800	Weak transcription	HSMM	muscle
11	chr7:98973400-98976800	Weak transcription	HSMMtube	muscle
12	chr7:98973400-98977000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:98973400-98977000	Weak transcription	Brain Anterior Caudate	brain
14	chr7:98973400-98977000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:98973400-98977000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:98973400-98977000	Weak transcription	Esophagus	oesophagus
17	chr7:98973400-98977000	Weak transcription	Right Atrium	heart
18	chr7:98973400-98977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:98973400-98977200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:98973400-98977200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:98973400-98977200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:98973400-98977600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:98973400-98977600	Weak transcription	Brain Substantia Nigra	brain
24	chr7:98973400-98977600	Weak transcription	Fetal Heart	heart
25	chr7:98973400-98977600	Weak transcription	Small Intestine	intestine
26	chr7:98973400-98978400	Weak transcription	Psoas Muscle	Psoas
27	chr7:98973400-98978600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:98973400-98978800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:98973400-98979000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:98973400-98979200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:98973400-98984000	Weak transcription	Aorta	Aorta
32	chr7:98973400-98984200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:98973400-98984200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:98973400-98984200	Weak transcription	Ovary	ovary
35	chr7:98973400-98984400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:98973400-98987400	Weak transcription	Brain Germinal Matrix	brain
37	chr7:98973400-98987800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:98973400-98989800	Weak transcription	Brain Angular Gyrus	brain
39	chr7:98973600-98976600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:98973600-98976600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:98973600-98976600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:98973600-98976800	Weak transcription	Right Ventricle	heart
43	chr7:98973800-98976600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:98973800-98976800	Enhancers	Primary hematopoietic stem cells	blood
45	chr7:98973800-98977200	Weak transcription	Left Ventricle	heart
46	chr7:98974000-98976600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:98974000-98976600	Weak transcription	NHDF-Ad	bronchial
48	chr7:98974000-98976800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:98974000-98976800	Weak transcription	Colon Smooth Muscle	Colon
50	chr7:98974000-98976800	Weak transcription	Fetal Muscle Leg	muscle

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