Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10233760	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs10239913	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268679	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980396	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs1541357	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs1557778	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs17145347	0.82[JPT][hapmap]
rs17145349	0.82[JPT][hapmap]
rs2072093	0.90[ASN][1000 genomes]
rs2158128	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs2285684	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs339	0.94[CEU][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4273751	0.94[CEU][hapmap]
rs6954728	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6965795	0.84[CHB][hapmap]
rs763543	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs7777804	0.94[CEU][hapmap]
rs7777932	0.95[EUR][1000 genomes]
rs7780746	0.88[JPT][hapmap]
rs7796655	0.95[EUR][1000 genomes]
rs7797084	0.94[CEU][hapmap]
rs7806574	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs7811898	0.84[CHB][hapmap]
rs961524	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961525	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21823600-21826400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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