Variant report

Variant	rs1557778
Chromosome Location	chr7:21818323-21818324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21816268..21818392-chr7:21823306..21824872,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1018918	0.91[CHD][hapmap]
rs10227372	0.81[JPT][hapmap]
rs10239913	0.95[EUR][1000 genomes]
rs10256263	0.83[JPT][hapmap]
rs10265592	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs10268039	0.81[JPT][hapmap]
rs10268330	0.81[JPT][hapmap]
rs10268679	0.95[EUR][1000 genomes]
rs11980396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12164106	0.81[JPT][hapmap]
rs12700308	0.83[CHD][hapmap]
rs1541357	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145586	0.85[CHB][hapmap]
rs2014193	0.87[CHD][hapmap]
rs2014196	0.90[JPT][hapmap]
rs2158128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189023	0.87[CHD][hapmap]
rs2214324	0.93[YRI][hapmap]
rs2214326	0.87[CHD][hapmap]
rs2285684	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390592	0.90[JPT][hapmap]
rs339	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4141347	0.91[CHD][hapmap]
rs4273751	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs4722054	0.81[JPT][hapmap]
rs6461598	0.81[JPT][hapmap]
rs6969900	0.91[CHD][hapmap]
rs6979777	0.81[JPT][hapmap]
rs763543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7777932	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788531	0.91[CHD][hapmap]
rs7791639	0.81[JPT][hapmap]
rs7792944	0.87[CHD][hapmap]
rs7796655	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797084	1.00[CEU][hapmap]
rs7800660	0.85[CHB][hapmap]
rs7804316	0.91[CHD][hapmap]
rs7806574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961524	0.95[EUR][1000 genomes]
rs961525	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs961526	0.81[JPT][hapmap]
rs979669	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21813200-21818600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:21816200-21824400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:21817400-21818400	Enhancers	Primary hematopoietic stem cells	blood
4	chr7:21817800-21818600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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