Variant report

Variant	rs961525
Chromosome Location	chr7:21824986-21824987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1011950	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1018918	1.00[JPT][hapmap]
rs10239296	0.84[JPT][hapmap]
rs10239913	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10256263	1.00[JPT][hapmap]
rs10265592	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10268679	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10277757	1.00[JPT][hapmap]
rs10807808	1.00[JPT][hapmap]
rs10950878	1.00[JPT][hapmap]
rs10950879	1.00[JPT][hapmap]
rs11980396	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700308	1.00[JPT][hapmap]
rs13231851	0.92[JPT][hapmap]
rs1541357	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557778	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17145488	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17145586	0.85[CHB][hapmap]
rs1962776	1.00[JPT][hapmap]
rs2014193	1.00[JPT][hapmap]
rs2158128	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2189023	1.00[JPT][hapmap]
rs2214325	1.00[JPT][hapmap]
rs2214326	1.00[JPT][hapmap]
rs2285684	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs339	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs4141347	1.00[JPT][hapmap]
rs4273751	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4582443	1.00[JPT][hapmap]
rs6969900	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs763543	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7777804	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs7777932	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7780479	0.92[JPT][hapmap]
rs7788531	1.00[JPT][hapmap]
rs7792944	1.00[JPT][hapmap]
rs7796655	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7797084	0.94[CEU][hapmap]
rs7800660	0.85[CHB][hapmap]
rs7801909	1.00[JPT][hapmap]
rs7806574	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs961524	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9639398	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21823600-21826400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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