Variant report
Variant | rs7800660 |
---|---|
Chromosome Location | chr7:21859440-21859441 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11980396 | 0.85[CHB][hapmap] |
rs1541357 | 0.85[CHB][hapmap] |
rs1557778 | 0.85[CHB][hapmap] |
rs17145586 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1859103 | 0.80[EUR][1000 genomes] |
rs2158128 | 0.85[CHB][hapmap] |
rs2285684 | 0.85[CHB][hapmap] |
rs4273751 | 0.85[CHB][hapmap] |
rs57154069 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs58773810 | 0.80[EUR][1000 genomes] |
rs6461603 | 0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
rs6957850 | 1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap] |
rs6965750 | 0.80[EUR][1000 genomes] |
rs6965795 | 0.80[EUR][1000 genomes] |
rs6969326 | 0.82[JPT][hapmap] |
rs73277730 | 0.81[EUR][1000 genomes] |
rs763543 | 0.85[CHB][hapmap] |
rs7777804 | 0.85[CHB][hapmap] |
rs7806574 | 0.85[CHB][hapmap] |
rs7811898 | 0.80[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs961525 | 0.85[CHB][hapmap] |
rs9691045 | 1.00[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
3 | nsv933320 | chr7:21840543-21882825 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:21858400-21859600 | Enhancers | Primary T cells from cord blood | blood |