Variant report

Variant	rs7811898
Chromosome Location	chr7:21845794-21845795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10265592	0.84[CHB][hapmap]
rs17145586	0.83[CEU][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs1859103	0.83[CEU][hapmap];0.91[CHD][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs57154069	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58773810	0.87[EUR][1000 genomes]
rs6461603	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6957850	0.81[CEU][hapmap];0.83[YRI][hapmap]
rs6965750	0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs6965795	0.83[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs73277724	0.88[EUR][1000 genomes]
rs73277730	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7800660	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9691045	0.83[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7811898	TWISTNB	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21834400-21848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:21845000-21846600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr7:21845600-21846200	Enhancers	Fetal Kidney	kidney
4	chr7:21845600-21847000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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