Variant report

Variant	rs6965750
Chromosome Location	chr7:21824122-21824123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10485975	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs17145331	0.82[CEU][hapmap]
rs17145586	0.81[EUR][1000 genomes]
rs17361723	1.00[JPT][hapmap]
rs1859103	0.91[CEU][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57154069	0.94[EUR][1000 genomes]
rs58773810	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6956997	0.82[CEU][hapmap]
rs6965795	0.83[ASW][hapmap];0.91[CEU][hapmap];0.89[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73277724	0.99[EUR][1000 genomes]
rs73277730	0.93[EUR][1000 genomes]
rs7800660	0.80[EUR][1000 genomes]
rs7811898	0.83[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21816200-21824400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:21822800-21824200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:21823600-21826400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:21823800-21824600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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