Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11980396	0.85[CHB][hapmap]
rs1541357	0.85[CHB][hapmap]
rs1557778	0.85[CHB][hapmap]
rs1859103	0.81[EUR][1000 genomes]
rs2158128	0.85[CHB][hapmap]
rs2285684	0.85[CHB][hapmap]
rs4273751	0.85[CHB][hapmap]
rs57154069	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58773810	0.81[EUR][1000 genomes]
rs6461603	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6957850	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs6965750	0.81[EUR][1000 genomes]
rs6965795	0.81[EUR][1000 genomes]
rs73277724	0.80[EUR][1000 genomes]
rs73277730	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs763543	0.85[CHB][hapmap]
rs7777804	0.85[CHB][hapmap]
rs7800660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7806574	0.85[CHB][hapmap]
rs7811898	0.83[CEU][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs961525	0.85[CHB][hapmap]
rs9691045	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv520409	chr7:21860316-21861028	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21859800-21860400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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