Variant report

Variant	rs6979777
Chromosome Location	chr7:21797066-21797067
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21788294..21791321-chr7:21795182..21798841,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10156026	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10227372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10268039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10268330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11980396	0.81[JPT][hapmap]
rs11983051	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12111611	0.88[JPT][hapmap]
rs12164106	0.81[JPT][hapmap]
rs1557778	0.81[JPT][hapmap]
rs17145316	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2014196	0.90[JPT][hapmap]
rs2072219	0.85[CEU][hapmap]
rs2158128	0.81[JPT][hapmap]
rs2214934	0.93[EUR][1000 genomes]
rs2285684	0.81[JPT][hapmap]
rs2390552	0.83[ASN][1000 genomes]
rs2390553	0.87[ASN][1000 genomes]
rs2390592	0.90[JPT][hapmap]
rs2906682	0.88[CEU][hapmap]
rs2906692	0.91[EUR][1000 genomes]
rs2906694	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs2965355	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2965356	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs3735523	1.00[JPT][hapmap]
rs4273751	0.81[JPT][hapmap]
rs4722054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6461598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974214	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs763543	0.81[JPT][hapmap]
rs7791639	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs886788	0.88[EUR][1000 genomes]
rs886789	0.91[EUR][1000 genomes]
rs961526	1.00[JPT][hapmap]
rs979669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:21793400-21797600	Weak transcription	Gastric	stomach
4	chr7:21794200-21797800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:21795000-21797200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:21795000-21797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:21795000-21804200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:21796000-21797800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:21796400-21797800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:21796600-21797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:21797000-21797200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links