Variant report
| Variant | rs961526 |
|---|---|
| Chromosome Location | chr7:21825012-21825013 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10156026 | 1.00[JPT][hapmap] |
| rs10227372 | 1.00[JPT][hapmap] |
| rs10268039 | 1.00[JPT][hapmap] |
| rs10268330 | 1.00[JPT][hapmap] |
| rs10271832 | 0.91[ASN][1000 genomes] |
| rs11980396 | 0.81[JPT][hapmap] |
| rs11983051 | 0.90[JPT][hapmap] |
| rs12111611 | 0.88[JPT][hapmap] |
| rs12164106 | 0.88[GIH][hapmap];0.81[JPT][hapmap];1.00[MKK][hapmap] |
| rs1557778 | 0.81[JPT][hapmap] |
| rs17145316 | 0.91[CHD][hapmap];0.90[JPT][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap];0.88[ASN][1000 genomes] |
| rs2014196 | 0.90[JPT][hapmap] |
| rs2158128 | 0.81[JPT][hapmap] |
| rs2285684 | 0.81[JPT][hapmap] |
| rs2390555 | 0.88[ASN][1000 genomes] |
| rs2390592 | 0.90[JPT][hapmap] |
| rs3735523 | 1.00[JPT][hapmap] |
| rs4273751 | 0.81[JPT][hapmap] |
| rs4722054 | 1.00[JPT][hapmap] |
| rs6461598 | 1.00[JPT][hapmap] |
| rs6974214 | 0.88[ASN][1000 genomes] |
| rs6979777 | 1.00[JPT][hapmap] |
| rs73277712 | 0.91[ASN][1000 genomes] |
| rs763543 | 0.81[JPT][hapmap] |
| rs7791639 | 0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs979669 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21823600-21826400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
